Open source image analysis platform designed for research applications.


Additional Information

Clinical | Research Suitability


User Customizable | Application-Specific Algorithms

User customizable

Imaging Modality Supported

Brightfield, Fluorescence

Supported Assay Types

Chromogenic in situ hybridization (CISH), Fluorescence in situ hybridization (FISH), Hematoxylin & Eosin (H&E), Immunofluorescence, Immunohistochemistry (IHC), Multiplexing (> 7 Markers), Special Stains

Max No. Multiplexed Biomarkers

>50 Biomarkers

Research Use Only Applications

User Customizable Algorithms Suitable for Multiple Applications

TMA Support


On-Premise Deployment


Cloud Deployment


Open Source?


File Formats Produced | Supported

*See Additional Notes, 3DHistech .mrxs, Akoya .qptiff, Hamamatsu .ndpi, Hamamatsu .ndpis, JPEG/JPG/JPEG 2000, Leica .afi, Leica .lif, Leica .scn, Leica .svs, Nikon .nd2, Olympus .vsi, TIFF/TIF, Ventana .bif, Zeiss .czi

Additional Notes*

*QuPath uses Bio-Formats to integrate image data from digital slide file formats. Please consult solution provider for details.


Specifications are gathered from publicly available online sources and are accurate to the best of our knowledge.

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