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January 2023

Netherlands Cancer Institute (NKI) Selects Proscia To Drive Personalized Diagnosis

2023-01-18T14:03:08+00:00

Proscia®, a leading provider of digital and computational pathology solutions, has announced that the Netherlands Cancer Institute (NKI), one of the top 10 comprehensive cancer centers in Europe, will deploy its Concentriq® Dx platform. NKI is transitioning to Concentriq Dx to expand its digital pathology practice, laying the foundation for its pathologists to deliver personalized diagnoses that better inform treatment decisions. In doing so, the cancer center, which houses an internationally acclaimed research institute, will generate additional pathology data that can lead to clinical breakthroughs.

Netherlands Cancer Institute (NKI) Selects Proscia To Drive Personalized Diagnosis2023-01-18T14:03:08+00:00

Brigham and Women’s Hospital: Artificial Intelligence Tool Developed to Help Make Real-Time Diagnoses During Surgery

2023-01-18T08:52:16+00:00

When a patient undergoes a surgical operation to remove a tumor or treat a disease, the course of surgery is often not predetermined. To decide how much tissue needs to be removed, surgeons must know more about the condition they are treating, including a tumor’s margins, its stage and whether a lesion is malignant or benign— determinations that often hinge upon collecting, analyzing, and diagnosing a disease while the patient is on the operating table. When surgeons send samples to a pathologist for examination, both speed and accuracy are of the essence. The current gold-standard approach for examining tissues often takes too long and a faster approach, which involves freezing tissue, can introduce artifacts that can complicate diagnostics. A new study by investigators from the Mahmood Lab at the  Brigham and Women’s Hospital, a founding member of the Mass General Brigham healthcare system, and collaborators from Bogazici University developed a better way; the method leverages artificial intelligence to translate between frozen sections and the gold-standard approach, improving the quality of images to increase the accuracy of rapid diagnostics. Findings are published in Nature Biomedical Engineering.“We are using the power of artificial intelligence to address an age-old problem at the intersection of surgery and pathology,” said corresponding author Faisal Mahmood, PhD, of the Division of Computational Pathology at BWH. “Making a rapid diagnosis from frozen tissue samples is challenging and requires specialized training, but this kind of diagnosis is a critical step in caring for patients during surgery.”For making final diagnoses, pathologists use formalin-fixed and paraffin-embedded (FFPE) tissue samples—this method preserves tissue in a way that produces high-quality images but the process is laborious and typically takes 12 to 48 hours. For a rapid diagnosis, pathologists use an approach known as cryosectioning that involves fast freezing tissue, cutting sections, and observing these thin slices under a microscope. Cryosectioning takes minutes rather than hours but can distort cellular details and compromise or tear delicate tissue.Mahmood and co-authors developed a deep-learning model that can be used to translate between frozen sections and more commonly used FFPE tissue. In their paper, the team demonstrated that the method could be used to subtype different kinds of cancer, including glioma and non-small-cell lung cancer. The team validated their findings by recruiting pathologists to a reader study in which they were asked to make a diagnosis from images that had gone through the AI method and traditional cryosectioning images. The AI method not only improved image quality but also improved diagnostic accuracy among experts. The algorithm was also tested on independently collected data from Turkey.The authors note that in the future, prospective clinical studies should be conducted to validate the AI method and determine if it can contribute to diagnostic accuracy and surgical decision-making in real hospital settings.“Our work shows that AI has the potential to make a time-sensitive, critical diagnosis easier and more accessible to pathologists,” said Mahmood. “And it could potentially be applied to any type of cancer surgery. It opens up many possibilities for improving diagnosis and patient care.”Paper cited: Ozyoruk, KB et al. “A deep-learning model for transforming the style of tissue images from cryosectioned to formalin-fixed and paraffin-embedded” Nature Biomedical Engineering DOI: 10.1038/s41551-022-00952-9SOURCE: Brigham and Women’s Hospital

Brigham and Women’s Hospital: Artificial Intelligence Tool Developed to Help Make Real-Time Diagnoses During Surgery2023-01-18T08:52:16+00:00

Reimbursement For Digital Pathology In The Clinic – How Does That Work? With Esther Abels, Visiopharm

2025-05-06T13:21:05+00:00

According to Esther Abels, Visiopharm’s Chief Clinical and Regulatory Officer, to align the digital pathology reimbursement with its value the fee-for-service paradigm needs to shift to a value-based reimbursement strategy.

Reimbursement For Digital Pathology In The Clinic – How Does That Work? With Esther Abels, Visiopharm2025-05-06T13:21:05+00:00

Routine Immunohistochemical Staining Can Detect Early Accumulation of Pathogenic Protein Aggregates in Non-central Nervous System Tissues in ALS

2023-01-16T10:08:37+00:00

by Christos Evangelou, MSc, PhD – Medical Writer and Editor Amyotrophic lateral sclerosis (ALS), also referred to as motor neuron disease (MND), is a progressive neurodegenerative disease that leads to gradual loss of muscle control. Even though ALS is traditionally considered a neurological disorder that predominantly affects neurons in the central nervous system (CNS), it is becoming [...]

Routine Immunohistochemical Staining Can Detect Early Accumulation of Pathogenic Protein Aggregates in Non-central Nervous System Tissues in ALS2023-01-16T10:08:37+00:00

Machine Learning Method Improves Cell Identity Understanding

2023-01-16T08:53:38+00:00

When genes are activated and expressed, they show patterns in cells that are similar in type and function across tissues and organs. Discovering these patterns improves our understanding of cells -- which has implications for unveiling disease mechanisms. The advent of spatial transcriptomics technologies has allowed researchers to observe gene expression in their spatial context across entire tissue samples. But new computational methods are needed to make sense of this data and help identify and understand these gene expression patterns. A research team led by Jian Ma, the Ray and Stephanie Lane Professor of Computational Biology in Carnegie Mellon University's School of Computer Science, has developed a machine learning tool to fill this gap. Their paper on the method, called SPICEMIX, appeared as the cover story in the most recent issue of Nature Genetics. SPICEMIX helps researchers untangle the role different spatial patterns play in the overall gene expression of cells in complex tissues like the brain. It does so by representing each pattern with spatial metagenes -- groups of genes that may be connected to a specific biological process and can display smooth or sporadic patterns across tissue. The team, which included Ma; Benjamin Chidester, a project scientist in the Computational Biology Department; and Ph.D. students Tianming Zhou and Shahul Alam, used SPICEMIX to analyze spatial transcriptomics data from brain regions in mice and humans. They leveraged the unique capabilities of SPICEMIX to uncover the landscape of the brain's cell types and spatial patterns. "We were inspired by cooking when we chose the name," Chidester said. "You can make all sorts of different flavors with the same set of spices. Cells may work in a similar way. They may use a common set of biological processes, but the specific combination they use gives them their unique identity." When applied to brain tissues, SPICEMIX identified spatial patterns of cell types in the brain more accurately than other methods. It also uncovered new expression patterns of brain cell types through the learned spatial metagenes. "These findings may help us paint a more complete picture of the complexity of brain cell types," Zhou said. The number of studies using spatial transcriptomics technologies is growing rapidly, and SPICEMIX can help researchers make the most of this high-volume, high-dimensional data. "Our method has the potential to advance spatial transcriptomics research and contribute to a deeper understanding of both basic biology and disease progression in complex tissues," Ma said.

Machine Learning Method Improves Cell Identity Understanding2023-01-16T08:53:38+00:00

From Regional To National: Digital Pathology Network Transformation | NPIC

2023-01-13T06:00:01+00:00

Transforming a regional digital pathology network into a national programme across the UK has the potential to save the NHS around £100m a year. Such a network – one that sees a centralised digital pathology image library and archive, as opposed to individual hospitals having their own infrastructure and teams to manage it – can also offer a range of other benefits alongside significant cost savings.

From Regional To National: Digital Pathology Network Transformation | NPIC2023-01-13T06:00:01+00:00

What’s New in the Upcoming Concentriq for Research v3.8

2023-01-12T08:00:37+00:00

Digital and computational pathology are transforming the R&D value chain – from discovery to market. As the trusted leader in life sciences, Concentriq for Research has allowed our customers working on discovery research to get the most out of their data. Our platform delivers fast and secure access to research, enables efficient multi-site collaboration, and forges seamless integration with third-party applications.

What’s New in the Upcoming Concentriq for Research v3.82023-01-12T08:00:37+00:00

Paige Collaborates with Microsoft to Transform Cancer Diagnosis and Treatment with the Use of Pathology AI

2023-01-11T15:23:36+00:00

Paige announces a collaboration with Microsoft to apply the power of artificial intelligence (AI) to digital pathology images to develop and deliver a new generation of clinical applications and computational biomarkers to transform cancer diagnosis and patient care. Microsoft will also make a strategic investment in Paige to accelerate the development and deployment of life-saving AI diagnostics.

Paige Collaborates with Microsoft to Transform Cancer Diagnosis and Treatment with the Use of Pathology AI2023-01-11T15:23:36+00:00

The Implementation Of Digital Pathology In Denmark – National Survey and Interviews

2023-01-11T10:32:00+00:00

Digital pathology (DP) is changing pathology departments dramatically worldwide, yet globally, few departments are presently digitalized for the full diagnostic workflow. Denmark is also on the road to full digitalization countrywide, and this study aim to cover experiences during the implementation process in a national context. Thus, quantitative questionnaires were distributed to all pathology departments in Denmark (n = 13) and distributed to all professions including medical clinical directors, medical doctors (MD) and biomedical laboratory scientists (BLS). For a qualitative perspective, we interviewed four employees representing four professions. Data were collected in 2019–2020. From the questionnaire and interviews, we found strategies differed at the Danish departments with regards to ambitions, technological equipment, workflows, and involvement of type of professions. DP education was requested by personnel. Informants were in general positive toward the digital future but mainly had concerns regarding the political pressure to integrate DP before technological advances are sufficient for maintaining rational budgets

The Implementation Of Digital Pathology In Denmark – National Survey and Interviews2023-01-11T10:32:00+00:00

Why and How Should Pathologists Keep up With AI? With David Harrison, University of St. Andrews

2025-05-06T13:22:01+00:00

Artificial Intelligence is starting to cross from pathology research into pathology clinical practice. With several AI-based algorithms approved for clinical use in Europe and many more in the making, it is clear that rather sooner than later it will be an integral part of practicing pathology.

Why and How Should Pathologists Keep up With AI? With David Harrison, University of St. Andrews2025-05-06T13:22:01+00:00
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